WSITools documentation!

Tools to aid Digital pathology deep learning projects

• Free software: MIT license
• Documentation: https://wsitools.readthedocs.io/en/latest/index.html

Features

WSITools is a whole slide image processing toolkit. It provides efficient ways to extract patches from whole slide images, and some other useful features for pathological image processing. Currently, it supports four patch extraction scenarios: .. 1. Extract patches from WSIs .. 2. Extract patches from WSIs and their label (i.e. their directory name) .. 1. TODO: Incomplete .. 3. Extract patches from a fixed and a float WSI .. 4. Extract patches from a fixed and a float WSI in places that intersect annotation objects .. 1. TODO: Incomplete

Additional Features

Contents:

• Getting started
  • Quick Start
• Example Commands
• Tissue Detection
• Patch Extraction
• Patch Extraction with Image Registration
• Patch extraction with Annotations
• Patch Extraction with Registration & Annotations

Indices and tables

• Index
• Module Index
• Search Page